Pre-prints
2024
Harvey, T. N., Gillard, G. B., Røsæg, L. L., Grammes, F., Monsen, Ø., Vik, J. O., Hvidsten, T. R. & Sandve, S. R. The genome regulatory landscape of Atlantic salmon liver through smoltification. PLoS ONE 19, e0302388 (2024).
2023
Sahlstrom, H. M., Datsomor, A. K., Monsen, O., Hvidsten, T. R. & Sandve, S. R. Functional validation of transposable element derived cis-regulatory elements in Atlantic salmon. G3 (2023).
https://doi.org/10.1093/g3journal/jkad034
Matilde Mengkrog Holen, Gustav Vaaje-Kolstad, Matthew Peter Kent, Simen Rød Sandve+, Gene family expansion and functional diversification of chitinase and chitin synthase genes in Atlantic salmon (Salmo salar), G3 Genes|Genomes|Genetics (2023);, jkad069, https://doi.org/10.1093/g3journal/jkad069
Arzumanova, K., Rohlfs, R.V., Grønvold, L., Strand, M.A., Hvidsten, T.R., Sandve, S.R+.. Analyses of Genome Regulatory Evolution Following Whole-Genome Duplication Using the Phylogenetic EVE Model. In: Van de Peer, Y. (eds) Polyploidy. Methods in Molecular Biology, vol 2545. (2023). Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2561-3_11
2022
Leipart, V., Ludvigsen, J., Kent, M., Sandve, S.R, To, T., Árnyasi, M., Kreibich, C. D., Dahle, B. & Amdam, G. V. Identification of 121 variants of honey bee Vitellogenin protein sequences with structural differences at functional sites. Protein Sci. 31, (2022).
2021
Godager L. H., Fjellheim S., Sandve, S.R. Tilrettelegging for dybdelæring ved bruk av samarbeidslæring og hverandrevurdering - med 200 studenter. Nordic journal of STEM education. (2021) DOI: https://doi.org/10.5324/njsteme.v5i1.3931
West, A. C., Mizoro, Y., Wood, S. H., Ince, L. M., Iversen, M., Jørgensen, E. H., Nome, T., Sandve, S. R., Loudon, A. S. I. & Hazlerigg, D. G. Immunologic Profiling of the Atlantic Salmon Gill by Single Nuclei Transcriptomics
Frontiers in Immunology. https://doi.org/10.3389/fimmu.2021.669889
Transkingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon. Strand, M. A., Yang J., Sandve, S. R., Pope, P. B., Hvidsten, T. R. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2021.01.038 (2021).
2020
West, A.C., Iversen, M., Jørgensen, E.H., Sandve, S.R., Hazlerigg, D.G. and Wood, S.H. 2020. Diversified regulation of circadian clock gene expression following whole genome duplication. PLoS Genetics 16(10), p. e1009097.
Løvmo, S. D., Madaro, A., Whatmore, P., Bardal, T., Ostensen, M.-A., Sandve, S. R., and Olsen, R. E. (2020) Mid and hindgut transcriptome profiling analysis of Atlantic salmon (Salmon salar) under unpredictable chronic stress. 7. Royal Society Open Science http://doi.org/10.1098/rsos.191480
2019
Pearse, D. E., Barson, N. J., Nome, T., Gao, G., Campbell, M. A., Abadía-Cardoso, A., Anderson, E. C., Rundio, D. E., Williams, T. H., Naish, K. A., Moen, T., Liu, S., Kent, M., Moser, M., Minkley, D. R., Rondeau, E. B., Brieuc, M. S. O., Sandve, S. R., Miller, M. R., Cedillo, L., Baruch, K., Hernandez, A. G., Ben-Zvi, G., Shem-Tov, D., Barad, O., Kuzishchin, K., Garza, J. C., Lindley, S. T., Koop, B. F., Thorgaard, G. H., Palti, Y. & Lien, S. Sex-dependent dominance maintains migration supergene in rainbow trout. Nature Ecology & Evolution (2019).
2018
Jin, Y., Angell, I. L., Sandve, S. R., Snipen, L. G., Olsen, Y., and Rudi, K. (2018) Atlantic salmon raised with diets low in long-chain polyunsaturated n-3 fatty acids in freshwater have a Mycoplasma-dominated gut microbiota at sea. Aquaculture Environment Interactions 11, 31-39. doi: 3354/aei00297
Jin, Y., Olsen, R. E., Østensen, M.-A., Gillard, G. B., Li, K., Harvey, T. N., Santi, N., Vadstein, O., Vik, J. O., Sandve, S. R., and Olsen, Y. (2018) Transcriptional regulation of lipid metabolism when salmon fry switches from endogenous to exogenous feeding. Aquaculture. doi: 10.1016/j.aquaculture.2018.12.089
2017
Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, et al. Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture. BMC Genomics. 2017;18(1): 484. doi:10.1186/s12864-017-3862-8
Samy JKA, Mulugeta TD, Nome T, Sandve SR, Grammes F, Kent MP, et al. SalmoBase: an integrated molecular data resource for Salmonid species. BMC Genomics. , Grammes F, Kent MP, et al. SalmoBase: an integrated molecular data resource for Salmonid species. BMC Genomics. 2017; 18(1): 482. doi:10.1186/s12864-017-3877-1
2016
T. G. Kirubakaran, H. Grove, M. P. Kent, S. R. Sandve, M. Baranski, T. Nome, M. C. De Rosa, B. Righino, T. Johansen, H. Otterå, A. Sonesson, S. Lien, and Ø. Andersen, “Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod.,” Molecular ecology, vol. 25, no. 10, pp. 2130–2143, 2016.
S. Lien, B. F. Koop, S. R. Sandve, J. R. Miller, M. P. Kent, T. Nome, T. R. Hvidsten, J. S. Leong, D. R. Minkley, A. Zimin, F. Grammes, H. Grove, A. Gjuvsland, B. Walenz, R. A. Hermansen, K. von Schalburg, E. B. Rondeau, A. Di Genova, J. K. Samy, J. Olav Vik, M. D. Vigeland, L. Caler, U. Grimholt, S. Jentoft, D. Inge Vage, P. de Jong, T. Moen, M. Baranski, Y. Palti, D. R. Smith, J. A. Yorke, A. J. Nederbragt, A. Tooming-Klunderud, K. S. Jakobsen, X. Jiang, D. Fan, Y. Hu, D. A. Liberles, R. Vidal, P. Iturra, S. J. Jones, I. Jonassen, A. Maass, S. W. Omholt, and W. S. Davidson, “The Atlantic salmon genome provides insights into rediploidization,” Nature, vol. 533, pp. 200–205, Apr. 2016.
R. A. Hermansen, T. R. Hvidsten, S. R. Sandve, and D. A. Liberles, “Extracting functional trends from whole genome duplication events using comparative genomics.,” Biol Proced Online, vol. 18, no. 1, pp. 11–10, 2016.
2015
S. R. Sandve+, T. Marcussen, K. Mayer, K. S. Jakobsen, L. Heier, B. Steuernagel, B. B. H. Wulff, and O. A. Olsen, “Chloroplast phylogeny of Triticum/Aegilops species is not incongruent with an ancient homoploid hybrid origin of the ancestor of the bread wheat D-genome.,” New Phytol., vol. 208, no. 1, pp. 9–10, 2015.
M. R. Kovi, S. Fjellheim, S. R. Sandve, A. Larsen, H. Rudi, T. Asp, M. P. Kent, and O. A. Rognli, “Population Structure, Genetic Variation, and Linkage Disequilibrium in Perennial Ryegrass Populations Divergently Selected for Freezing Tolerance.,” Front Plant Sci, vol. 6, no. 323, p. 929, 2015.
2014
T. Belova, L. Grønvold, A. Kumar, S. Kianian, X. He, M. Lillemo, N. M. Springer, S. Lien, O. A. Olsen, and S. R. Sandve+, “Utilization of deletion bins to anchor and order sequences along the wheat 7B chromosome.,” Theor. Appl. Genet., vol. 127, no. 9, pp. 2029–2040, 2014.
IWGSC, “A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome,” Science, vol. 345, no. 6194, pp. 1251788–1251788, 2014.
M. Pfeifer, K. G. Kugler, S. R. Sandve, B. Zhan, H. Rudi, T. R. Hvidsten, C. International Wheat Genome Sequencing, K. F. X. Mayer, and O. A. Olsen, “Genome interplay in the grain transcriptome of hexaploid bread wheat.,” Science, vol. 345, no. 6194, pp. 1250091–1250091, 2014.
T. Marcussen*, S. R. Sandve*+, L. Heier, M. Spannagl, M. Pfeifer, C. International Wheat Genome Sequencing, K. S. Jakobsen, B. B. H. Wulff, B. Steuernagel, K. F. X. Mayer, and O. A. Olsen, “Ancient hybridizations among the ancestral genomes of bread wheat.,” Science, vol. 345, no. 6194, pp. 1250092–1250092, 2014.
H. Helgeland, S. R. Sandve, J. S. Torgersen, M. K. Halle, H. Sundvold, S. Omholt, and D. I. Våge, “The evolution and functional divergence of the beta-carotene oxygenase gene family in teleost fish--exemplified by Atlantic salmon.,” Gene, vol. 543, no. 2, pp. 268–274, 2014.
2013
M. D. Vigeland, M. Spannagl, T. Asp, C. Paina, H. Rudi, O. A. Rognli, S. Fjellheim, and S. R. Sandve, “Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor.,” New Phytol., vol. 199, no. 4, pp. 1060–1068, 2013.
T. Belova, B. Zhan, J. Wright, M. Caccamo, T. Asp, H. Šimková, M. Kent, C. Bendixen, F. Panitz, S. Lien, J. Doležel, O. A. Olsen, and S. R. Sandve+, “Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat.,” BMC genomics, vol. 14, no. 1, p. 222, 2013.
J. C. Preston and S. R. Sandve, “Adaptation to seasonality and the winter freeze.,” Front Plant Sci, vol. 4, p. 167, 2013.
2012
C. Li, H. Rudi, E. J. Stockinger, H. Cheng, M. Cao, S. E. Fox, T. C. Mockler, B. Westereng, S. Fjellheim, O. A. Rognli, and S. R. Sandve+, “Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses.,” BMC Plant Biol., vol. 12, no. 1, p. 65, 2012.
2011
J. Bartoš, S. R. Sandve, R. Kölliker, D. Kopecký, P. Christelová, S. Stočes, L. Ostrem, A. Larsen, A. Kilian, O. A. Rognli, and J. Doležel, “Genetic mapping of DArT markers in the Festuca-Lolium complex and their use in freezing tolerance association analysis.,” Theor. Appl. Genet., vol. 122, no. 6, pp. 1133–1147, 2011.
H. Rudi, S. R. Sandve, L. M. Opseth, A. Larsen, and O. A. Rognli, “Identification of candidate genes important for frost tolerance in Festuca pratensis Huds. by transcriptional profiling.,” Plant Sci., vol. 180, no. 1, pp. 78–85, 2011.
S. R. Sandve, A. Kosmala, H. Rudi, S. Fjellheim, M. Rapacz, T. Yamada, and O. A. Rognli, “Molecular mechanisms underlying frost tolerance in perennial grasses adapted to cold climates.,” Plant Sci., vol. 180, no. 1, pp. 69–77, 2011.
2010
S. R. Sandve, H. Rudi, G. Dorum, P. R. Berg, and O. A. Rognli, “High-throughput genotyping of unknown genomic terrain in complex plant genomes: lessons from a case study,” Molecular Breeding, vol. 26, no. 4, pp. 711–718, 2010.
M. Q. Benedict, S. R. Sandve, E. E. Wilkins, and J. M. Roberts, “Relationship of larval desiccation to Anopheles gambiae Giles and An. arabiensis Patton survival,” J Vector Ecol, vol. 35, no. 1, pp. 116–123, 2010.
S. R. Sandve and S. Fjellheim, “Did gene family expansions during the Eocene-Oligocene boundary climate cooling play a role in Pooideae adaptation to cool climates?,” Molecular ecology, vol. 19, no. 10, pp. 2075–2088, 2010.
2008
S. R. Sandve, H. Rudi, T. Asp, and O. A. Rognli, “Tracking the evolution of a cold stress associated gene family in cold tolerant grasses.,” Bmc Evol Biol, vol. 8, no. 1, p. 245, 2008.
2005
H. J. Overgaard, S. R. Sandve, and W. Suwonkerd, “Evidence of anopheline mosquito resistance to agrochemicals in northern Thailand,” Southeast Asian J Trop Med Public Health, vol. 36, pp. 152–157, 2005.
Peer-reviewed papers
Laksen er garantert Norges mest biologisk forvirrede husdyr. Opinion piece in Dagens Næringsliv. Read it here. (2023)